Description

Prediction of a protein’s secondary structure from its amino acid sequence

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

fasta

:file

protein FASTA file containing one or more amino acid sequences to predict their respective secondary structures

*.{fasta,fa,fas,fna,faa}

Output

name:type
description
pattern

preds

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}

:directory

A folder with all the prediction outputs

${prefix}

versions_s4pred

${task.process}

:string

The name of the process

s4pred

:string

The name of the tool

1.2.1

:string

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

s4pred

:string

The name of the tool

1.2.1

:string

The expression to obtain the version of the tool

Tools

s4pred
GPL v3-or-later

Accurate prediction of a protein's secondary structure from its amino acid sequence